The depth of the Neuse estuary was obtained from a bathymetric map
(NOAA, Map 11552) at a resolution of 500 m
500 m. These
depths are interpolated to the nodes on the finest level triangulation
as shown in Fig. A1. Depth,
(m), is the
only environment variable that does not vary temporally. The
variables temperature, bottom salinity and DO all vary spatially and
temporally. The actual mechanisms causing variations in temperature,
salinity and DO are not explicitly modeled. Instead, the modeling goal
is to create environment variables which are realistic inputs for the
model and, particularly in the case of DO, which can be altered.
Temperature, salinity and DO have both deterministic, spatial and
temporally varying random components. Representing these variables
spatially is done using a discrete representation over the estuary
(Appendix A.2). The random component
(Appendix A.3.1) is created by pre-generating
Gaussian random fields,
, (Ripley 1987) with mean
0, variance 1 and a particular spatial and temporal correlation
structure which are then transformed to create the temperature
(Appendix A.3.2) and salinity
(Appendix A.3.3) variables and the disturbance
regime altering bottom water dissolved oxygen (DO)
(Appendix A.3.4).