#Save false positive rates and false negative rates from model
#evaluations, in order to calculate True Skill Statistic (TSS)
#manually, outside of R.

capture.output(abi.bal.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.abi.bal.eval.upon.training.data.FPR.txt")
capture.output(ace.rub.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.ace.rub.eval.upon.training.data.FPR.txt")
capture.output(ace.sac.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.ace.sac.eval.upon.training.data.FPR.txt")
capture.output(aln.inc.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.aln.inc.eval.upon.training.data.FPR.txt")
capture.output(bet.all.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.bet.all.eval.upon.training.data.FPR.txt")
capture.output(car.spp.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.car.spp.eval.upon.training.data.FPR.txt")
capture.output(cas.den.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.cas.den.eval.upon.training.data.FPR.txt")
capture.output(fag.gra.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.fag.gra.eval.upon.training.data.FPR.txt")
capture.output(fra.ame.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.fra.ame.eval.upon.training.data.FPR.txt")
capture.output(fra.nig.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.fra.nig.eval.upon.training.data.FPR.txt")
capture.output(jug.cin.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.jug.cin.eval.upon.training.data.FPR.txt")
capture.output(jug.nig.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.jug.nig.eval.upon.training.data.FPR.txt")
capture.output(lir.tul.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.lir.tul.eval.upon.training.data.FPR.txt")
capture.output(mag.acu.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.mag.acu.eval.upon.training.data.FPR.txt")
capture.output(ost.vir.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.ost.vir.eval.upon.training.data.FPR.txt")
capture.output(pin.str.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.pin.str.eval.upon.training.data.FPR.txt")
capture.output(pla.occ.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.pla.occ.eval.upon.training.data.FPR.txt")
capture.output(pru.ser.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.pru.ser.eval.upon.training.data.FPR.txt")
capture.output(que.alb.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.que.alb.eval.upon.training.data.FPR.txt")
capture.output(que.vel.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.que.vel.eval.upon.training.data.FPR.txt")
capture.output(til.ame.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.til.ame.eval.upon.training.data.FPR.txt")
capture.output(tsu.can.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.tsu.can.eval.upon.training.data.FPR.txt")
capture.output(ulm.ame.eval.upon.lot.line.section@FPR, file = "myGbmModelOut.ulm.ame.eval.upon.training.data.FPR.txt")

capture.output(abi.bal.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.abi.bal.eval.upon.training.data.FNR.txt")
capture.output(ace.rub.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.ace.rub.eval.upon.training.data.FNR.txt")
capture.output(ace.sac.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.ace.sac.eval.upon.training.data.FNR.txt")
capture.output(aln.inc.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.aln.inc.eval.upon.training.data.FNR.txt")
capture.output(bet.all.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.bet.all.eval.upon.training.data.FNR.txt")
capture.output(car.spp.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.car.spp.eval.upon.training.data.FNR.txt")
capture.output(cas.den.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.cas.den.eval.upon.training.data.FNR.txt")
capture.output(fag.gra.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.fag.gra.eval.upon.training.data.FNR.txt")
capture.output(fra.ame.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.fra.ame.eval.upon.training.data.FNR.txt")
capture.output(fra.nig.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.fra.nig.eval.upon.training.data.FNR.txt")
capture.output(jug.cin.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.jug.cin.eval.upon.training.data.FNR.txt")
capture.output(jug.nig.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.jug.nig.eval.upon.training.data.FNR.txt")
capture.output(lir.tul.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.lir.tul.eval.upon.training.data.FNR.txt")
capture.output(mag.acu.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.mag.acu.eval.upon.training.data.FNR.txt")
capture.output(ost.vir.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.ost.vir.eval.upon.training.data.FNR.txt")
capture.output(pin.str.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.pin.str.eval.upon.training.data.FNR.txt")
capture.output(pla.occ.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.pla.occ.eval.upon.training.data.FNR.txt")
capture.output(pru.ser.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.pru.ser.eval.upon.training.data.FNR.txt")
capture.output(que.alb.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.que.alb.eval.upon.training.data.FNR.txt")
capture.output(que.vel.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.que.vel.eval.upon.training.data.FNR.txt")
capture.output(til.ame.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.til.ame.eval.upon.training.data.FNR.txt")
capture.output(tsu.can.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.tsu.can.eval.upon.training.data.FNR.txt")
capture.output(ulm.ame.eval.upon.lot.line.section@FNR, file = "myGbmModelOut.ulm.ame.eval.upon.training.data.FNR.txt")

#capture.output(abi.bal.eval.upon.township.line.section@FPR, file = "myGbmModelOut.abi.bal.eval.upon.township.line.section.FPR.txt")
capture.output(ace.rub.eval.upon.township.line.section@FPR, file = "myGbmModelOut.ace.rub.eval.upon.township.line.section.FPR.txt")
capture.output(ace.sac.eval.upon.township.line.section@FPR, file = "myGbmModelOut.ace.sac.eval.upon.township.line.section.FPR.txt")
capture.output(aln.inc.eval.upon.township.line.section@FPR, file = "myGbmModelOut.aln.inc.eval.upon.township.line.section.FPR.txt")
capture.output(bet.all.eval.upon.township.line.section@FPR, file = "myGbmModelOut.bet.all.eval.upon.township.line.section.FPR.txt")
capture.output(car.spp.eval.upon.township.line.section@FPR, file = "myGbmModelOut.car.spp.eval.upon.township.line.section.FPR.txt")
capture.output(cas.den.eval.upon.township.line.section@FPR, file = "myGbmModelOut.cas.den.eval.upon.township.line.section.FPR.txt")
capture.output(fag.gra.eval.upon.township.line.section@FPR, file = "myGbmModelOut.fag.gra.eval.upon.township.line.section.FPR.txt")
capture.output(fra.ame.eval.upon.township.line.section@FPR, file = "myGbmModelOut.fra.ame.eval.upon.township.line.section.FPR.txt")
capture.output(fra.nig.eval.upon.township.line.section@FPR, file = "myGbmModelOut.fra.nig.eval.upon.township.line.section.FPR.txt")
capture.output(jug.cin.eval.upon.township.line.section@FPR, file = "myGbmModelOut.jug.cin.eval.upon.township.line.section.FPR.txt")
capture.output(jug.nig.eval.upon.township.line.section@FPR, file = "myGbmModelOut.jug.nig.eval.upon.township.line.section.FPR.txt")
#capture.output(lir.tul.eval.upon.township.line.section@FPR, file = "myGbmModelOut.lir.tul.eval.upon.township.line.section.FPR.txt")
capture.output(mag.acu.eval.upon.township.line.section@FPR, file = "myGbmModelOut.mag.acu.eval.upon.township.line.section.FPR.txt")
capture.output(ost.vir.eval.upon.township.line.section@FPR, file = "myGbmModelOut.ost.vir.eval.upon.township.line.section.FPR.txt")
capture.output(pin.str.eval.upon.township.line.section@FPR, file = "myGbmModelOut.pin.str.eval.upon.township.line.section.FPR.txt")
capture.output(pla.occ.eval.upon.township.line.section@FPR, file = "myGbmModelOut.pla.occ.eval.upon.township.line.section.FPR.txt")
capture.output(pru.ser.eval.upon.township.line.section@FPR, file = "myGbmModelOut.pru.ser.eval.upon.township.line.section.FPR.txt")
capture.output(que.alb.eval.upon.township.line.section@FPR, file = "myGbmModelOut.que.alb.eval.upon.township.line.section.FPR.txt")
capture.output(que.vel.eval.upon.township.line.section@FPR, file = "myGbmModelOut.que.vel.eval.upon.township.line.section.FPR.txt")
capture.output(til.ame.eval.upon.township.line.section@FPR, file = "myGbmModelOut.til.ame.eval.upon.township.line.section.FPR.txt")
capture.output(tsu.can.eval.upon.township.line.section@FPR, file = "myGbmModelOut.tsu.can.eval.upon.township.line.section.FPR.txt")
capture.output(ulm.ame.eval.upon.township.line.section@FPR, file = "myGbmModelOut.ulm.ame.eval.upon.township.line.section.FPR.txt")

#capture.output(abi.bal.eval.upon.township.line.section@FNR, file = "myGbmModelOut.abi.bal.eval.upon.township.line.section.FNR.txt")
capture.output(ace.rub.eval.upon.township.line.section@FNR, file = "myGbmModelOut.ace.rub.eval.upon.township.line.section.FNR.txt")
capture.output(ace.sac.eval.upon.township.line.section@FNR, file = "myGbmModelOut.ace.sac.eval.upon.township.line.section.FNR.txt")
capture.output(aln.inc.eval.upon.township.line.section@FNR, file = "myGbmModelOut.aln.inc.eval.upon.township.line.section.FNR.txt")
capture.output(bet.all.eval.upon.township.line.section@FNR, file = "myGbmModelOut.bet.all.eval.upon.township.line.section.FNR.txt")
capture.output(car.spp.eval.upon.township.line.section@FNR, file = "myGbmModelOut.car.spp.eval.upon.township.line.section.FNR.txt")
capture.output(cas.den.eval.upon.township.line.section@FNR, file = "myGbmModelOut.cas.den.eval.upon.township.line.section.FNR.txt")
capture.output(fag.gra.eval.upon.township.line.section@FNR, file = "myGbmModelOut.fag.gra.eval.upon.township.line.section.FNR.txt")
capture.output(fra.ame.eval.upon.township.line.section@FNR, file = "myGbmModelOut.fra.ame.eval.upon.township.line.section.FNR.txt")
capture.output(fra.nig.eval.upon.township.line.section@FNR, file = "myGbmModelOut.fra.nig.eval.upon.township.line.section.FNR.txt")
capture.output(jug.cin.eval.upon.township.line.section@FNR, file = "myGbmModelOut.jug.cin.eval.upon.township.line.section.FNR.txt")
capture.output(jug.nig.eval.upon.township.line.section@FNR, file = "myGbmModelOut.jug.nig.eval.upon.township.line.section.FNR.txt")
#capture.output(lir.tul.eval.upon.township.line.section@FNR, file = "myGbmModelOut.lir.tul.eval.upon.township.line.section.FNR.txt")
capture.output(mag.acu.eval.upon.township.line.section@FNR, file = "myGbmModelOut.mag.acu.eval.upon.township.line.section.FNR.txt")
capture.output(ost.vir.eval.upon.township.line.section@FNR, file = "myGbmModelOut.ost.vir.eval.upon.township.line.section.FNR.txt")
capture.output(pin.str.eval.upon.township.line.section@FNR, file = "myGbmModelOut.pin.str.eval.upon.township.line.section.FNR.txt")
capture.output(pla.occ.eval.upon.township.line.section@FNR, file = "myGbmModelOut.pla.occ.eval.upon.township.line.section.FNR.txt")
capture.output(pru.ser.eval.upon.township.line.section@FNR, file = "myGbmModelOut.pru.ser.eval.upon.township.line.section.FNR.txt")
capture.output(que.alb.eval.upon.township.line.section@FNR, file = "myGbmModelOut.que.alb.eval.upon.township.line.section.FNR.txt")
capture.output(que.vel.eval.upon.township.line.section@FNR, file = "myGbmModelOut.que.vel.eval.upon.township.line.section.FNR.txt")
capture.output(til.ame.eval.upon.township.line.section@FNR, file = "myGbmModelOut.til.ame.eval.upon.township.line.section.FNR.txt")
capture.output(tsu.can.eval.upon.township.line.section@FNR, file = "myGbmModelOut.tsu.can.eval.upon.township.line.section.FNR.txt")
capture.output(ulm.ame.eval.upon.township.line.section@FNR, file = "myGbmModelOut.ulm.ame.eval.upon.township.line.section.FNR.txt")

#capture.output(abi.bal.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.abi.bal.eval.upon.township.bt.post.FPR.txt")
capture.output(ace.rub.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.ace.rub.eval.upon.township.bt.post.FPR.txt")
capture.output(ace.sac.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.ace.sac.eval.upon.township.bt.post.FPR.txt")
#capture.output(aln.inc.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.aln.inc.eval.upon.township.bt.post.FPR.txt")
capture.output(bet.all.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.bet.all.eval.upon.township.bt.post.FPR.txt")
capture.output(car.spp.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.car.spp.eval.upon.township.bt.post.FPR.txt")
capture.output(cas.den.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.cas.den.eval.upon.township.bt.post.FPR.txt")
capture.output(fag.gra.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.fag.gra.eval.upon.township.bt.post.FPR.txt")
capture.output(fra.ame.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.fra.ame.eval.upon.township.bt.post.FPR.txt")
capture.output(fra.nig.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.fra.nig.eval.upon.township.bt.post.FPR.txt")
#capture.output(jug.cin.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.jug.cin.eval.upon.township.bt.post.FPR.txt")
#capture.output(jug.nig.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.jug.nig.eval.upon.township.bt.post.FPR.txt")
#capture.output(lir.tul.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.lir.tul.eval.upon.township.bt.post.FPR.txt")
capture.output(mag.acu.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.mag.acu.eval.upon.township.bt.post.FPR.txt")
capture.output(ost.vir.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.ost.vir.eval.upon.township.bt.post.FPR.txt")
capture.output(pin.str.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.pin.str.eval.upon.township.bt.post.FPR.txt")
#capture.output(pla.occ.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.pla.occ.eval.upon.township.bt.post.FPR.txt")
capture.output(pru.ser.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.pru.ser.eval.upon.township.bt.post.FPR.txt")
capture.output(que.alb.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.que.alb.eval.upon.township.bt.post.FPR.txt")
capture.output(que.vel.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.que.vel.eval.upon.township.bt.post.FPR.txt")
capture.output(til.ame.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.til.ame.eval.upon.township.bt.post.FPR.txt")
capture.output(tsu.can.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.tsu.can.eval.upon.township.bt.post.FPR.txt")
capture.output(ulm.ame.eval.upon.township.bt.post@FPR, file = "myGbmModelOut.ulm.ame.eval.upon.township.bt.post.FPR.txt")

#capture.output(abi.bal.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.abi.bal.eval.upon.township.bt.post.FNR.txt")
capture.output(ace.rub.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.ace.rub.eval.upon.township.bt.post.FNR.txt")
capture.output(ace.sac.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.ace.sac.eval.upon.township.bt.post.FNR.txt")
#capture.output(aln.inc.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.aln.inc.eval.upon.township.bt.post.FNR.txt")
capture.output(bet.all.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.bet.all.eval.upon.township.bt.post.FNR.txt")
capture.output(car.spp.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.car.spp.eval.upon.township.bt.post.FNR.txt")
capture.output(cas.den.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.cas.den.eval.upon.township.bt.post.FNR.txt")
capture.output(fag.gra.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.fag.gra.eval.upon.township.bt.post.FNR.txt")
capture.output(fra.ame.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.fra.ame.eval.upon.township.bt.post.FNR.txt")
capture.output(fra.nig.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.fra.nig.eval.upon.township.bt.post.FNR.txt")
#capture.output(jug.cin.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.jug.cin.eval.upon.township.bt.post.FNR.txt")
#capture.output(jug.nig.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.jug.nig.eval.upon.township.bt.post.FNR.txt")
#capture.output(lir.tul.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.lir.tul.eval.upon.township.bt.post.FNR.txt")
capture.output(mag.acu.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.mag.acu.eval.upon.township.bt.post.FNR.txt")
capture.output(ost.vir.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.ost.vir.eval.upon.township.bt.post.FNR.txt")
capture.output(pin.str.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.pin.str.eval.upon.township.bt.post.FNR.txt")
#capture.output(pla.occ.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.pla.occ.eval.upon.township.bt.post.FNR.txt")
capture.output(pru.ser.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.pru.ser.eval.upon.township.bt.post.FNR.txt")
capture.output(que.alb.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.que.alb.eval.upon.township.bt.post.FNR.txt")
capture.output(que.vel.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.que.vel.eval.upon.township.bt.post.FNR.txt")
capture.output(til.ame.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.til.ame.eval.upon.township.bt.post.FNR.txt")
capture.output(tsu.can.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.tsu.can.eval.upon.township.bt.post.FNR.txt")
capture.output(ulm.ame.eval.upon.township.bt.post@FNR, file = "myGbmModelOut.ulm.ame.eval.upon.township.bt.post.FNR.txt")



#Save workspace.

save.image(file="sdm.objects.with.Native.variables.biomod2.step.5.RData")