Brigitte Tenhumberg, Tomomi Suwa, Andrew J. Tyre, Leland Russell, and Svata M. Louda. 2015. Integral projection models show exotic thistle is more limited than native thistle by ambient competition and herbivory. Ecosphere 6:69. http://dx.doi.org/10.1890/es14-00389.1
Supplement
Data files and R-scripts for statistical analysis and integral projection modeling described in the main text.
Ecological Archives C006-017-S1.
Authors
File list (downloads)
Description
Brigitte Tenhumberg
School of Biological Sciences and Department of Mathematics
University of Nebraska
Lincoln, NE, 68588
E-mail: [email protected]
Andrew J. Tyre
School of Natural Resources
University of Nebraska
Lincoln, NE, 68588
E-mail: [email protected]
File list
Establishment.and.survival.csv (MD5: a2d7c17a4976be7762b43a815126fdbe)
Reproduction 2006&2007.csv (MD5: 54ce76bd982cb1e15162c40ea7276aed)
July 2007 census and biomass2 edited.csv (MD5: 38a41af122fb6b90dfb723b3b740a6e0)
Tall Thistle 2006 Updated Dec 2010.csv (MD5: 5dd859826ace0e751cd51c10bc4d4c0f)
Tall Thistle 2007 Updated Dec 2010.csv (MD5: 0de9c392b393e594a49c65a3f3118235)
IPM statistics bolting.R (MD5: dc8c3868f1e24ad0446c0266a529c361)
IPM Statistics growth.R (MD5: 21260c8b65c0606e110207c2060800d9)
IPM statistics recruitment.R (MD5: 6914a0c0c892f76c0977c24a9a649eea)
IPM statistics initial size.R (MD5: cff5c4ee3d3c58ff056d3e8aa390f7c1)
IPM statistics seed production.R (MD5: 1de9453716f25b3d8f5ae4b276237050)
IPM statistics survival.R (MD5: 4b93fdf09019f572f0e88715fba0482d)
IPM.Parameters.csv (MD5: d3ab447e0c4ddc1ae12d89af3fb5d5d9)
IPM model and bootstrap.R (MD5: 5e92d9d9072b67f4ca9e1e20538f99b9)
Description
For the statistical analysis the file “IPM statistics growth.R” needs to be executed first.
The statistical results are saved in the file “IPM.Parameters.csv”, allowing the execution of the “IPM model and bootstrap.R”-file without running the statistics scripts first.
Description of variables:
Establishment and Survival.csv
ID |
Plant identification number |
Block |
Block number (there is a total of 6 blocks) |
SPECIES |
Thistle species: TT = tall thistle ; BT = bull thistle |
COMP |
Competition level: COMP=high (ambient, control, 65 - 90% cover); COMP=medium (reduced to 25 - 35% cover); and COMP=low (reduced to 0 - 5% cover). |
HERB |
Levels of herbivore pressure: HERB= Ambient (no manipulation), HERB = Reduced (insecticide application) |
species |
Thistle species: 1 = tall thistle (only one species in this data set) |
comp |
Competition level: Comp = 2(ambient, control, 65 - 90% cover); Comp = 1 (reduced to 25 - 35% cover); and Comp = 0 (reduced to 0 - 5% cover). |
herb |
Levels of herbivore pressure: Herb = 1 (ambient), Herb = 0 (insecticide application) |
Total.emerged.07.08 |
Number of seedlings emerges (out of 400 seeds) |
Reproduction 2006&2007
year |
Calendar year of sampling |
id |
Plant identification number |
site |
|
comp |
Competition level: Comp = 2(ambient, control, 65 - 90% cover); Comp = 1 (reduced to 25 - 35% cover); and Comp = 0 (reduced to 0 - 5% cover). |
herb |
Levels of herbivore pressure: Herb = 1 (ambient), Herb = 0 (insecticide application) |
initialrosettediam |
Initial rosette diameter in cm |
sqrt.initialrosettediam |
Square root transformed initial rosette diameter in cm |
seedproducedyesno |
Seed production 0( = No, 1 = Yes) |
flowerhds |
Total number of mature flower heads per plant |
lnflowerhds |
Natural Log of total number of flower heads per plant |
noseeds |
Total Number of seeds per plant |
lnnoseeds |
Natural Log of Total Number of seeds |
leavesAUG |
Total Number of leaves in August |
biomass |
Total aboveground biomass in g |
July 2007 census and biomass2 edited
ID |
Plant identification number |
block |
Block number (there is a total of 6 blocks) |
plot |
Plot number |
reps |
Replication number |
Species |
Thistle species: TT = tall thistle ; BT = bull thistle |
Comp |
Competition level: Comp = high (ambient, control, 65 - 90% cover); Comp = medium (reduced to 25 - 35% cover); and Comp=low (reduced to 0 - 5% cover). |
Herb |
Levels of herbivore pressure: Herb= Ambient (no manipulation), Herb = Reduced (insecticide application) |
species |
Thistle species: 1 = tall thistle (only one species in this data set) |
comp |
Competition level: Comp = 2(ambient, control, 65 - 90% cover); Comp = 1 (reduced to 25 - 35% cover); and Comp = 0 (reduced to 0 - 5% cover). |
herb |
Levels of herbivore pressure: Herb = 1 (ambient, control), Herb = 0 (insecticide application) |
no.leaves07 |
Number of leaves in July 2007 |
ave.diam07 |
Average rosette diameter in July 2007 in cm (two measurements, perpendicular to each other) |
mid.leaf.length07 |
Length of an average (medium) leaf |
meristem.da07 |
Presence of meristem damage in July 2007 (0 = No, 1 = Yes) |
ttl.leaf.da.score07 |
Total leaf damage score in July 2007 (1 = 0.1-6.2%, 2 = 6.3-12.4%, 3 = 12.5 - 24.9%, 4 = 25-49.9%, 5 > 50%) |
ave.da.per.leaf07 |
Average leaf damage score per leaf ( total leaf damage score / total leaf numbers) in July 2007 |
survived08 |
Plant survival in July 2008 ( 0 = dead, 1 = alive) |
bolt08 |
Presence of bolt in July 2008 ( 0 = not bolted, 1 = bolted) |
no.leaves08 |
Total Number of leaves in July 2008 |
no.buds08 |
Number of buds in July 2008 |
biomass.buds08 |
Total bud biomass in July 2008 (g) |
biomass.leaves08 |
Total leaf biomass in July 2008 (g) |
veg.bio |
Vegetative biomass in g (stem biomass +leaf biomass) |
comments |
Comments |
total biomass 08 |
Total aboveground biomass in g (in 2008 (stem biomass +leaf biomass +bud biomass) |
Tall thistle 2006 Updated Dec 2010
Tall thistle 2007Updated Dec 2010
Plant ID |
Plant Identification number |
Topo |
Topographical location of the plot |
year |
Calendar year of sampling |
site |
Data were collected at different sites in Nebraska: 9mile = Nine Mile Prairie, divoky = , DivokyAcres = JackSinn, Nine-mile , TripleCreek = , trplcrk = , TwinLakes |
Species |
Thistle species: TT = tall thistle (only one species in this data set) |
Comp |
Competition level: Comp=high (only one competition level in this data set). Plant cover was not manipulated, which is comparable to the cover in the bull thistle experiments. |
Herb |
Levels of herbivore pressure: Herb= Ambient (no manipulation), Herb = Reduced (insecticide application) |
species |
Thistle species: 1 = tall thistle (only one species in this data set) |
comp |
Competition level: comp = 2 (only one competition level in this data set). Plant cover was not manipulated, which is comparable to the cover in the bull thistle experiments. |
herb |
Levels of herbivore pressure: Herb = 1 (no manipulation), Herb = 2 (insecticide application) |
Rsst Diam Ext |
rosette diameter |
No Lvs |
Number of leaves |
no.buds |
the mean number of seeds (whether damaged or not, developed or not) produced per flower head that flowered and was dissected |
hdsflrd |
the total number of flower heads produced by the plant |
viable seeds |
Y=yes, the plant produced viable seeds, N= no, the plant did not produce any viable seeds |
mean developed, undamaged seeds per head |
the mean number of developed, undamaged seeds produced per flower head that flowered and was dissected |
total.seeds |
the total number of seeds produced per plant (=hdsflrd* mean developed, undamaged seeds per head) |
mean total seeds per hd |
The mean total number of seeds (whether damaged or not, developed or not) produced per flower head that flowered and was dissected. |
Date 2 |
Date on which the earliest flower head to disperse seeds was collected for dissection. Seeds were captured by enclosing post-anthesis flower heads in mesh bags. Also, the date on which year-end measurements, such as ‘hdsflrd,’ were made. |
comments |
Comments |
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