Ecological Archives E096-013-A2

Ecological Archives E096-013-A2

A. van der Wal, E. Ottosson, and W. de Boer. 2015. Neglected role of fungal community composition in explaining variation in wood decay rates. Ecology 96:124–133. http://dx.doi.org/10.1890/14-0242.1

Appendix B. Most abundant OTUs (representing ≥10% of the total number of sequences) in decaying oak sapwood.

Table B1. Most abundant OTUs (representing ≥ 10% of the total number of sequences) in decaying oak sapwood. Ecological groups are defined as: p = parasite, wr = white-rot fungus, sr = soft-rot fungus, sa = fungus with saprotrophic abilities, sp = combining both saprotrophic and parasitic abilities, en = endophytic fungus. F = fresh, Y = young and O= old stumps, see Material and Methods section for description of sampling methods.

OTU number	Identification	Order	Ecology	Genbank match	≥ 10% found in F, Y or O stumps?	presence in number of stumps	E-Value	Max identity (%)	Literature
0	Mollisia sp.	Helotiales	sa	JX507704	F, Y, O	18	3E-161	99	Kirk et al. 2008
1	Trametes versicolor	Polyporales	wr	KC581354	Y, O	9	0E+00	99	Baldrian 2003
2	Panellus stipticus	Agaricales	wr	UDB011385	F, Y	10	1E-146	98	Aggelisa et al. 2002
3	Nemania diffusa	Xylariales	sp	FR667971	Y, O	2	3E-122	98	Balasuriya and Adikaram 2009
4	unidentified Helotiales	Helotiales	unk	JX860449	F, Y, O	7	5E-159	99
5 and 23	Hymenoscyphus sp.	Helotiales	unk	GU479911	Y	1	2E-119	97
6	Thanatephorus cucumeris	Cantharellales	sp	FR670341	Y	3	0E+00	98	Qu et al. 2008
7	Peniophorella pubera	Polyporales	wr	UDB016357	Y, O	4	0E+00	99	Nakasone. 1990
8	unidentified Heliotales	Helotiales	unk	KC180735	Y, O	2	2E-158	98
9	unidentified Xylariales	Xylariales	unk	KF986412	Y	2	4E-98	86
10	unidentified Sordariales	Sordariales	unk	HM044649	O	2	3E-149	95
11	Stereum sp.	Russulales	wr	EU273556	Y, O	4	3E-179	96	Miller et al. 2006
12	Phlebia radiata	Polyporales	wr	AY089740	O	2	0E+00	99	Niku-Paavola et al. 1988
13	Mycena galericulata	Agaricales	wr	UDB011416	Y, O	2	0E+00	98	Kähkönen and Hakulinen 2011
14	Lenzites betulina	Polyporales	wr	UDB015755	Y	3	0E+00	98	Niemelä 2005
15	Stereum annosum	Russulales	wr	DQ000294	Y	2	0E+00	99	Miller et al. 2006
16	Haplographium sp.	Helotiales	unk	HM136670	O	1	3E-163	99
17	Hypholoma sublateritium	Agaricales	wr	JF692735	Y	1	0E+00	99	de Jong and Field 1997.
18	Hypholoma fasciculare	Agaricales	wr	UDB011502	Y	1	0E+00	99	de Jong and Field 1997.
OTU number	Identification	Order	Ecology	Genbank match	≥ 10% found in F, Y, or O stumps?	presence in number of stumps	E-Value	Max identity (%)	Literature
19	Ophiostoma sp.	Ophiostomatales	p	JX444662	F	2	0E+00	97	Kirk et al. 2008
20	Megacollybia platyphylla	Agaricales	wr	UDB011396	O	2	0E+00	98	Worrall et al. 1997
22	Leptodontidium elatius	Helotiales	p	AF475152	Y	1	1E-163	98	Graf-Widmark 2010
24	Chaetosphaeria sp.	Chaetosphaeriales	unk	HF677176	Y	2	1E-145	96
25	unidentified Agaricales	Agaricales	unk	DQ309168	Y	1	2E-169	96
27	Candida savonica	Saccharomycetales	sa?	JQ026350	Y	1	1E-126	99	Sonck 1974
28	Peniophorella praetermissa	Hymenochaetales	wr	HQ392620	Y	1	0E+00	99	Nakasone. 1990
30	unidentified Sordariales	Sordariales	unk	KF617904	O	1	4E-155	97
31	unidentified Heliotales	Helotiales	unk	AY781241	O	1	8E-160	98
34	unidentified Agaricales	Agaricales	unk	DQ309168	Y	1	5E-172	95
35	unidentified Atheliales	Atheliales	unk	KF617959	O	1	0E+00	99
37	unidentified Cystofilobasidiales	Cystofilobasidiales	unk	KC588728	F	2	4E-122	99
38	Microbotryomycetidae sp	Microbotryomycetes	p?	GU174389	F	2	1E-173	94	Sampaio et al. 2003
39	Chaetosphaeria decastyla	Chaetosphaeriales	unk	HF677176	Y	1	2E-163	99
40	Hyphodontia radula	Hymenochaetales	wr	AF145565	O	1	2E-155	99	Nakasone 1990.
42	Phaeoacremonium sp.	Calosphaeriales	p	HQ022067	Y	1	9E-118	97	Crous et al. 1996
43	Cryptococcus filicatus	Filobasidiales	sa?	FN908210	F	1	0E+00	99	Randhawa et al. 2001
45	unidentified Trechisporales	Trechisporales	unk	FJ820507	O	1	0E+00	99
52	Leucosporidiella creatinivora	Leucosporidiales	sa	NR_073329	F	1	0E+00	99	Middelhoven 2006
53	Candida railenensis	Saccharomycetales	en/sa	FM178302	F	1	0E+00	99	Isaeva et al. 2010.
63	Cadophora malorum	Helotiales	en/sr	DQ404350	F	1	6E-166	99	Blanchette et al. 2004
91	unidentified Diaporthales	Diaporthales	unk	HQ611311	Y	1	2E-110	90
128	unidentified Xylariales	Xylariales	unk	AY843084	O	2	3E-133	98

Literature cited

Aggelis, G., Ehaliotis, C., Nerud, F., Stoychev, I., Lyberatos, G., and G. Zervakis. 2002. Evaluation of white-rot fungi for detoxification and decolorization of effluents from the green olive debittering process. Applied Microbiology and Biotechnology 59:353–360.

Balasuriya, A. and N. K. B. Adikaram. 2009. Some spatial, temporal and spatio-temporal considerations of wood decay of tea (Camellia sinensis), caused by Nemania diffusa (Syn. Hypoxylon vestitum). Crop Protection 28:273–279.

Baldrian, P. 2003. Interactions of heavy metals with white-rot fungi. Enzyme and Microbial Technology 32:78–91.

Blanchette, R. A., Held, B. W., Jurgens, J. A., McNew, D. L., Harrington, T. C., Duncan, S. M., and R. L. Farrell. 2004. Wood-destroying soft rot fungi in the historic expedition huts of Antarctica. Applied Envirnomental Micobiology 70:1328–1335.

Crous, P. W., Gams, W., Wingfield, M. J., and P. S. van Wyk. 1996. Phaeoacremonium gen. nov. associated with wilt and decline diseases of woody hosts and human infections. Mycologia 88:786–796.

De Jong, E., and J. A. Field. 1997. Sulfur tuft and turkey tail: biosynthesis and biodegradation of organohalogens by Basidiomycetes. Annual review of microbiology 51:375–414.

Graf-Wimark, D. 2010. Substrate utilization, ammonium mineralization and phylogenetic relationships of the fungi Leptodontidium sp. found in boreal forest soil. MSc Thesis, Unversity of Agricultural Sciences, Uppsala.

Isaeva, O. V., Glushakova, A. M., Garbuz, S. A., Kachalkin, A. V., Chernov, and I. Yu. 2010. Endophytic yeast fungi in plant storage tissues. Biology Bulletin 37:26–34.

Kähkönen MA, and R. Hakulinen. 2011. Hydrolytic enzyme activities, carbon dioxide production and the growth of litter degrading fungi in different soil layers in a coniferous forest in Northern Finland. European Journal of Soil Biology 47:108–113.

Kirk, P. M., P. F. Cannon, and J. A. Stalpers. 2008. Dictionary of the Fungi. CABI 1-784.

Middelhoven, W. 2006. Polysaccharides and phenolic compounds as substrate for yeasts isolated from rotten wood and description of Cryptococcus fagi sp.nov. Antonie van Leeuwenhoek 90:57–67.

Miller, S., Larsson, E., Larsson, K-H., Verbeken, A., and J. Nuytinck. 2006. Perspectives in the new Russulales. Mycologia 98:960–970.

Nakasone, K. 1990. Cultural studies and identifications of wood-inhabiting Corticiaceae and selected Hymenomycetes from North America Mycologia Memoirs 15:1–412.

Niemelä T. 2005. Polypores, lignicolous fungi. Helsinki University press, Helsinki, Finland.

Niku-Paavola, M-L., Karhunen, E., Salola, P., and V. Raunio. 1988. Lignolytic enzymes of the white-rot fungus Phlebia radiata. Biochemical Journal 254:877–884.

Qu, P., K. Yamashita, T. Toda, A. Priyatmojo, M. Kubota, and M. Hyakumachi. 2008. Heterokaryon formation in Thanatephorus cucumeris (Rhizoctonia solani) AG-1 IC. Mycological Research 112:1088–1100.

Randhawa, H. S., A. Y. Mussa, and Z. U. Khan. 2001. Decaying wood in tree trunk hollows as a natural substrate for Cryptococcus neoformans and other yeast-like fungi of clinical interest. Mycopathologia 151:63–69.

Sampaio, J., M. Gadanho, R. Bauer, and M. Weiß. 2003. Taxonomic studies in the Microbotryomycetidae: Leucosporidium golubevii sp. nov., Leucosporidiella gen. nov. and the new orders Leucosporidiales and Sporidiobolales. Mycological Progress 2:53–68.

Sonck, C. E. 1974. Candida savonica sp. nov. Antonie van Leeuwenhoek 40:543–545.

Worrall, J. J., Anagnost, S. E., and R. A. Zabel. 1997. Comparison of wood decay among diverse lignicolous fungi. Mycologia 89:199–219.

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