Nathan P. Myhrvold, Elita Baldridge, Benjamin Chan, Dhileep Sivam, Daniel L. Freeman, and S. K. Morgan Ernest. 2015. An amniote life-history database to perform comparative analyses with birds, mammals, and reptiles. Ecology 96:3109. http://dx.doi.org/10.1890/15-0846.1


Data Paper

Ecological Archives E096-269-D1.

Copyright


Authors
Data Files
Abstract
Metadata


Author(s)

Nathan P. Myhrvold
Intellectual Ventures
Bellevue, Washington 98005 USA
E-mail: nathanm@intven.com

Elita Baldridge
Department of Biology and the Ecology Center
Utah State University, Logan, Utah 84322 USA

Benjamin Chan
Intellectual Ventures
Bellevue, Washington 98005 USA

Dhileep Sivam
Intellectual Ventures
Bellevue, Washington 98005 USA

Daniel L. Freeman
Intellectual Ventures
Bellevue, Washington 98005 USA

S. K. Morgan Ernest
Department of Biology and the Ecology Center
Utah State University, Logan, Utah 84322 USA
and
Department of Wildlife Ecology and Conservation
University of Florida
Gainesville, Florida 32611 USA


Data Files

Amniote_Database_Aug_2015.csv (MD5: 10e7c14395d95ed7f53258f96fadb4f7)

Amniote_Database_References_Aug_2015.csv (md5: 58ce0c047162154dd752cfdd16c1dd26)

Amniote_Sparse_Table_Aug_2015.csv (MD5: 03253b795e400f629b823e730cd7f75a)

Amniote_Range_Count_Aug_2015.csv (MD5: 8095602c7d10befc52feaf22db8e6c76)

Supplemental_Table_1_Database_Literature_Cited.pdf (MD5: )

Supplemental_Table_2_Reference_Counts.csv (MD5: )

Supplemental_Table_3_Aves_Name_Transformations.csv (MD5: )

Supplemental_Table_4_Mammalia_Name_Transformations.csv (MD5: )

Supplemental_Table_5_Reptilia_Name_Transformations.csv (MD5: )

Supplemental_Table_6_Aves_Synonyms.csv (MD5: )

Supplemental_Table_7_Mammalia_Synonyms.csv (MD5: )

Supplemental_Table_8_Reptilia_Synonyms.csv (MD5: )

Supplemental_Table_9_Dataset_Field_Information.csv (MD5: )


Abstract

Studying life-history traits within and across taxonomic classifications has revealed many interesting and important patterns, but this approach to life history requires access to large compilations of data containing many different life-history parameters. Currently, life-history data for amniotes (birds, mammals, and reptiles) is split among a variety of publicly available databases, data tables embedded in individual papers and books, and species-specific studies by experts. Using data from this wide range of sources is a challenge for conducting macroecological studies because of a lack of standardization in taxonomic classifications, parameter values, and even in which parameters are reported. In order to facilitate comparative analyses between amniote life-history data, we created a database compiled from peer-reviewed studies on individual species, macroecological studies of multiple species, existing life-history databases, and other aggregated sources as well as published books and other compilations. First, we extracted and aggregated the raw data from the aforementioned sources. Next, we resolved spelling errors and other formatting inconsistencies in species names through a number of computational and manual methods. Once this was completed, subspecies-level data and species-level data were shared via a data-sharing algorithm to accommodate the variety of species transformations (taxonomic promotions, demotions, merges, divergences, etc.) that have occurred over time. Finally, in species where multiple raw data points were identified for a given parameter, we report the median value. Here, we report a normalized and consolidated database of up to 29 life-history parameters, containing at least one life-history parameter for 21 322 species of birds, mammals, and reptiles.

Key words: amniote; birds; body size; comparative analyses; database; life history; macroecology; mammals; reptiles.