Digital Appendices, Supplements, and Data Papers for Ecological Applications, Volume 16, 2006
Hobbs, N. Thompson, and Ray Hilborn. 2006.
Alternatives to statistical hypothesis testing in ecology: a guide to self teaching.
Ecological Applications 16:5–19.
Ecological Archives A016-001.
Ives, Anthony R., and Jun Zhu. 2006.
Statistics for correlated data: phylogenies, space, and time.
Ecological Applications 16:20–32.
Ecological Archives A016-002.
Latimer, Andrew M., Shanshan Wu, Alan E. Gelfand, and John A. Silander, Jr. 2006.
Buiding statistical models to analyze species distributions.
Ecological Applications 16:33–50.
Ecological Archives A016-003.
Gotelli, Nicholas J., and Aaron M. Ellison. 2006.
Forecasting extinction risk with nonstationary matrix models.
Ecological Applications 16:51–61.
Ecological Archives A016-004.
Canham, Charles D., and María Uriarte. 2006.
Analysis of neighborhood dynamics of forest ecosystems using likelihood methods and modeling.
Ecological Applications 16:62–73.
Ecological Archives A016-005.
Newman, K. B., S. T. Buckland, S. T. Lindley, L. Thomas, and C. Fernández. 2006.
Hidden process models for animal population dynamics.
Ecological Applications 16:74–86.
Ecological Archives A016-006.
Hoeting, Jennifer A., Richard A. Davis, Andrew A. Merton, and Sandra E. Thompson. 2006.
Model selection for geostatistical models.
Ecological Applications 16:87–98.
Ecological Archives A016-007.
Williams, Claire G., Shannon L. LaDeau, Ram Oren, and Gabriel G. Katul. 2006.
Modeling seed dispersal distances: implications for transgenic Pinus taeda.
Ecological Applications 16:117–124.
Ecological Archives A016-008.
Barnes, Belinda, Huiquan Bi, and Michael L. Roderick. 2006.
Application of an ecological framework linking scales based on self-thinning.
Ecological Applications 16:133–142.
Ecological Archives A016-009.
Suárez, Esteban R., Timothy J. Fahey, Joseph B. Yavitt, Peter M. Groffman, and Patrick J. Bohlen. 2006.
Patterns of litter disappearance in a northern hardwood forest invaded by exotic earthworms.
Ecological Applications 16:154–165.
Ecological Archives A016-010.
Pearman, Peter B., Mike R. Penskar, Edward H. Schools, and Helen D. Endander. 2006.
Identifying potential indicators of conservation value using Natural Heritage occurrence data.
Ecological Applications 16:186–201.
Ecological Archives A016-011.
Golicher, Duncan J., Bob R. O'Hara, Lorena Ruíz-Montoya, and Luis Cayuela. 2006.
Lifting a veil on diversity: a Bayesian approach to fitting relative abundance models.
Ecological Applications 16:202–212.
Ecological Archives A016-012.
Chelgren, Nathan D., Daniel K. Rosenberg, Selina S. Heppell, and Alix I. Gitelman. 2006.
Carryover aquatic effects on survival of metamorphic frogs during pond emigration.
Ecological Applications 16:250–261.
Ecological Archives A016-013.
Shrewsbury, Paula M., and Michael J. Raupp. 2006.
Do top-down or bottom-up forces determine Stephanitis pyrioides abundance in urban landscapes?
Ecological Applications 16:262–272.
Ecological Archives A016-014.
Verspagen, Jolanda M. H., Jutta Passarge, Klaus D. Jöhnk, Petra M. Visser, Louis Peperzak, Paul Boers, Hendrikus J. Laanbroek, and Jef Huisman. 2006.
Water management strategies against toxic Microcystis blooms in the Dutch delta.
Ecological Applications 16:313–327.
Ecological Archives A016-015.
Greathouse, Effie A., Catherine M. Pringle, William H. McDowell, and Jeff G. Holmquist. 2006.
Indirect upstream effects of dams: consequences of migratory consumer extirpation in Puerto Rico.
Ecological Applications 16:339–352.
Ecological Archives A016-016.
Burhans, Dirk E., and Frank R. Thompson, III. 2006.
Songbird abundance and parasitism differs between urban and rural shrublands.
Ecological Applications 16:394–405.
Ecological Archives A016-017.
Wiens, J. David, Barry R. Noon, and Richard T. Reynolds. 2006.
Post-fledging survival of Northern Goshawks: the importance of prey abundance, weather, and dispersal.
Ecological Applications 16:406–418.
Ecological Archives A016-018.
Arnold, Jennifer M., Soilange Brault, and John P. Croxall. 2006.
Albatross populations in peril: a population trajectory for Black-browed Albatrosses at South Georgia.
Ecological Applications 16:419–432.
Ecological Archives A016-019.
Bodin, Örjan, Maria Tengö, Anna Norman, Jakob Lundberg, and Thomas Elmqvist. 2006.
The value of small size: loss of forest patches and thresholds in southern Madagascar.
Ecological Applications 16:440–451.
Ecological Archives A016-020.
Linderman, Marc A., Li An, Scott Bearer, Guangming He, Zhiyun Ouyang, and Jianguo Liu. 2006.
Interactive effects of natural and human disturbances on vegetation dynamics across landscapes.
Ecological Applications 16:452–463.
Ecological Archives A016-021.
Zahawi, R. A., and C. K. Augspurger. 2006.
Tropical forest restoration: tree islands as recruitment foci in degraded lands of Honduras.
Ecological Applications 16:464–478.
Ecological Archives A016-022.
Canham, Charles D., Michael J. Papaik, María Uriarte, William H. McWilliams, Jennifer C. Jenkins, and Mark J. Twery. 2006.
Neighborhood analyses of canopy tree competition along environmental gradients in New England forests.
Ecological Applications 16:540–554.
Ecological Archives A016-023.
Golubiewski, Nancy E. 2006.
Urbanization increases grassland carbon pools: effects of landscaping in Colorado's Front Range.
Ecological Applications 16:555–571.
Ecological Archives A016-024.
Lehmkuhl, John F., Keith D. Kistler, James S. Begley, and John Boulanger. 2006.
Demography of northern flying squirrels informs ecosystem management of western interior forests.
Ecological Applications 16:584–600.
Ecological Archives A016-025.
Gratton, Claudia, and Robert F. Denno. 2006.
Arthropod food web restoration following removal of an invasive wetland plant.
Ecological Applications 16:622–631.
Ecological Archives A016-026.
Cane, James H., Robert L. Minckley, Linda J. Kervin, T'ai H. Roulston, and Neal M. Williams. 2006.
Complex responses within a desert bee guild (Hymenoptera: Apiformes) to urban habitat fragmentation.
Ecological Applications 16:632–644.
Ecological Archives A016-027.
Finkelstein, Myra, Bradford S. Keitt, Donald A. Croll, Bernie Tershy, Walter M. Jarman, Sue Rodriguez-Pastor, David J. Anderson, Paul R. Sievert, and Donald R. Smith. 2006.
Albatross species demonstrate regional differences in north Pacific marine contamination.
Ecological Applications 16:678–686.
Ecological Archives A016-028.
Lindberg, William J., Thomas K. Frazer, Kenneth M. Portier, Frederic Vose, James Loftin, Debra J. Murie, Doran M. Mason, Brian Nagy, and Mary K. Hart. 2006.
Density-dependent habitat selection and performance by a large mobile reef fish.
Ecological Applications 16:731–746.
Ecological Archives A016-029.
Thompson, Douglas M. 2006.
Did the pre-1980 use of in-stream structures improve streams? A reanalysis of historic data.
Ecological Applications 16:784–796.
Ecological Archives A016-030.
Mangel, Marc, Phillip Levin, and Anand Patil. 2006.
Using life history and persistence criteria to prioritize habitats for mangement and conservation.
Ecological Applications 16:797–806.
Ecological Archives A016-031.
Hauser, Cindy E., Anthony R. Pople, and Hugh P. Possingham. 2006.
Should managed populations be monitored every year?
Ecological Applications 16:807–819.
Ecological Archives A016-032.
Fagan, William F., and Frithjof Lutscher. 2006.
The average dispersal success: linking home range size, dispersal, and metapopulation dynamics to reserve design.
Ecological Applications 16:820–829.
Ecological Archives A016-033.
Conn, Paul B., Anthony D. Arthur, Larissa L. Bailey, and Grant R. Singleton. 2006.
Estimating the abundance of mouse populations of known size: promises and pitfalls of new methods.
Ecological Applications 16:829–837.
Ecological Archives A016-034.
Mercer, Kristin L., Ruth G. Shaw, and Donald L. Wyse. 2006.
Increased germination of diverse crop–wild hybrid sunflower seeds.
Ecological Applications 16:845–854.
Ecological Archives A016-035.
Parnell, P. Ed, Paul K. Dayton, Cleridy E. Lennert-Cody, Linda L. Rasmussen, and James J. Leichter. 2006.
Marine reserve design: optimal size, habitats, species affinities, diversity, and ocean microclimate.
Ecological Applications 16:945–962.
Ecological Archives A016-036.
Guidetti, Paolo. 2006.
Marine reserves reestablish lost predatory interactions and cause community change in rocky reefs.
Ecological Applications 16:963–976.
Ecological Archives A016-037.
O'Farrell, Michael R., and Louis W. Botsford. 2006.
Estimating the status of nearshore rockfish (Sebastes spp.) populations with length frequency data.
Ecological Applications 16:977–986.
Ecological Archives A016-038.
Cunningham, Mary Ann, and Douglas H. Johnson. 2006.
Proximate and landscape factors influence grassland bird distributions.
Ecological Applications 16:1062–1075.
Ecological Archives A016-039.
Betts, Matthew G., Graham J. Forbes, Antony W. Diamond, and Philip D. Taylor. 2006.
Independent effects of fragmentation on forest songbirds: an organism-based approach.
Ecological Applications 16:1076–1089.
Ecological Archives A016-040.
Hall, Robert O., Jr., Mark F. Dybdahl, and Maria C. Vanderloop. 2006.
Extremely high secondary production of introduced snails in rivers.
Ecological Applications 16:1121–1131.
Ecological Archives A016-041.
Davies, Susan P., and Susan K. Jackson. 2006.
The biological condition gradient: a descriptive model for interpreting change in aquatic ecosystems.
Ecological Applications 16:1251–1266.
Ecological Archives A016-042.
de Zwart, Dick, Scott D. Dyer, Leo Posthuma, and Charles P. Hawkins. 2006.
Predictive models attribute effects on fish assemblages to toxicity and habitat alteration.
Ecological Applications 16:1295–1310.
Ecological Archives A016-043.
Suding, Katharine Nash, and Katherine L. Gross. 2006.
Modifying native and exotic richness correlations: the influence of fire and seed addition.
Ecological Applications 16:1319–1326.
Ecological Archives A016-044.
Burns, Jean H. 2006.
Relatedness and environment affect traits associated with invasive and noninvasive introduced Commelinaceae.
Ecological Applications 16:1367–1376.
Ecological Archives A016-045.
Inglis, Graeme J., Helen Hurren, John Oldman, and Rachel Haskew. 2006.
Using habitat suitability index and particle dispersion models for early detection of marine invaders.
Ecological Applications 16:1377–1390.
Ecological Archives A016-046.
Durand, Sébastien, Pierre Legendre, and S. Kim Juniper. 2006.
Sonar backscatter differentiation of dominant macrohabitat types in a hydrothermal vent field.
Ecological Applications 16:1421–1435.
Ecological Archives A016-047.
Olden, Julian D., Michael K. Joy, and Russell G. Death. 2006.
Rediscovering the species in community-wide predictive modeling.
Ecological Applications 16:1449–1460.
Ecological Archives A016-048.
Stewart, Katherine J., and Azim U. Mallik. 2006.
Bryophyte responses to microclimatic edge effects across riparian buffers.
Ecological Applications 16:1474–1486.
Ecological Archives A016-049.
Harvey, Chris J., Nick Tolimieri, and Phillip S. Levin. 2006.
Changes in body size, abundance, and energy allocation in rockfish assemblages of the northeast Pacific.
Ecological Applications 16:1502–1515.
Ecological Archives A016-050.
Peery, M. Zachariah, Benjamin H. Becker, and Steven R. Beissinger. 2006.
Combining demographic and count-based approaches to identify source-sink dynamics of a threatened seabird.
Ecological Applications 16:1516–1528.
Ecological Archives A016-051.
Moynahan, Brendan J., Mark S. Lindberg, and Jack Ward Thomas. 2006.
Factors contributing to process variance in annual survival of female Greater Sage-Grouse in Montana.
Ecological Applications 16:1529–1538.
Ecological Archives A016-052.
Bruggeman, Jason E., Robert A. Garrott, Daniel D. Bjornlie, P. J. White, Fred G. R. Watson, and John Borkowski. 2006.
Temporal variability in winter travel patterns of Yellowstone bison: the effects of road grooming.
Ecological Applications 16:1539–1554.
Ecological Archives A016-053.
Zaehle, Sönke, Stephen Sitch, I. Colin Prentice, Jari Liski, Wolfgang Cramer, Markus Erhard, Thomas Hickler, and Benjamin Smith. 2006.
The importance of age-related decline in forest NPP for modeling regional carbon balances.
Ecological Applications 16:1555–1574.
Ecological Archives A016-054.
Costamagna, Alejandro C., and Douglas A. Landis. 2006.
Predators exert top-down control of soybean aphid across a gradient of agricultural management systems.
Ecological Applications 16:1619–1628.
Ecological Archives A016-055.
Sanchirico, James N., Urmila Malvadkar, Alan Hastings, and James E. Wilen. 2006.
When are no-take zones an economically optimal fishery management strategy?
Ecological Applications 16:1643–1659.
Ecological Archives A016-056.
Shriner, Susan A., Kenneth R. Wilson, and Curtis H. Flather. 2006.
Reserve networks based on richness hotspots and representation vary with scale.
Ecological Applications 16:1660–1673.
Ecological Archives A016-057.
Sheller, Frances J., William F. Fagan, and Peter J. Unmack. 2006.
Using survival analysis to study translocation success in the Gila topminnow, Poeciliopsis occidentalis.
Ecological Applications 16:1771–1784.
Ecological Archives A016-058.
Chadwick, Michael A., Dean R. Dobberfuhl, Arthur C. Benke, Alexander D. Huryn, Keller Suberkropp, and John E. Thiele. 2006.
Urbanization affects stream ecosystem function by altering hydrology, chemistry, and biotic richness.
Ecological Applications 16:1796–1807.
Ecological Archives A016-059.
Reinhart, Kurt O., Julie Gurnee, Reyes Tirado, and Ragan M. Callaway. 2006.
Invasion through quantitative effects: intense shade drives decline and invasive success.
Ecological Applications 16:1821–1831.
Ecological Archives A016-060.
Thorne, James H., Joshua O'Brien, Matthew L. Forister, and Arthur M. Shapiro. 2006.
Building phenological models from presence/absence data for a butterfly fauna.
Ecological Applications 16:1842–1853.
Ecological Archives A016-061.
Yanoviak, Stephen P., J. E. Ramírez Paredes, L. Philip Lounibos, and Scott C. Weaver. 2006.
Deforestation alters phytotelm habitat availability and mosquito production in the Peruvian Amazon.
Ecological Applications 16:1854–1864.
Ecological Archives A016-062.
Papaik, Michael J., and Charles D. Canham. 2006.
Multi-model analysis of tree competition along environmental gradients in southern New England forests.
Ecological Applications 16:1880–1892.
Ecological Archives A016-063.
Caut, Stéphane, Gary W. Roemer, C. Josh Donlan, and Franck Courchamp. 2006.
Coupling stable isotopes with bioenergetics to estimate interspecific interactions.
Ecological Applications 16:1893–1900.
Ecological Archives A016-064.
Borkowski, John J., P. J. White, Robert A. Garrott, Troy Davis, Amanda R. Hardy, and Daniel J. Reinhart. 2006.
Behavioral responses of bison and elk in Yellowstone to snowmobiles and snow coaches.
Ecological Applications 16:1911–1925.
Ecological Archives A016-065.
Wintle, B. A., and D. C. Bardos. 2006.
Modeling species–habitat relationships with spatially autocorrelated observation data.
Ecological Applications 16:1945–1958.
Ecological Archives A016-066.
Drechsler, Martin, Karin Johst, Frank Wätzold, and Michael I. Westphal. 2006.
Integrating economic costs into the analysis of flexible conservation management strategies.
Ecological Applications 16:1959–1966.
Ecological Archives A016-067.
Gabriel, Doreen, Indra Roschewitz, Teja Tscharntke, and Carsten Thies. 2006.
Beta diversity at different spatial scales: plant communities in organic and conventional agriculture.
Ecological Applications 16:2011–2021.
Ecological Archives A016-068.
Pérez, Tibisay, Diana Garcia-Montiel, Susan Trumbore, Stanley Tyler, Plínio de Camargo, Marcelo Moreira, Marisa Piccolo, and Carlos Cerri. 2006.
Nitrous oxide nitrification and denitrification 15N enrichment factors from Amazon forest soils.
Ecological Applications 16:2153–2167.
Ecological Archives A016-069.
Perlut, Noah G., Allan M. Strong, Therese M. Donovan, and Neil J. Buckley. 2006.
Grassland songbirds in a dynamic management landscape: behavioral responses and management strategies.
Ecological Applications 16:2235–2247.
Ecological Archives A016-070.
Kaplan, David M., Louis W. Botsford, and Salvador Jorgensen. 2006.
Dispersal per recruit: an efficient method for assessing sustainability in marine reserve networks.
Ecological Applications 16:2248–2263.
Ecological Archives A016-071.
Magierowski, Regina H., and Craig R. Johnson. 2006.
Robustness of surrogates of biodiversity in marine benthic communities.
Ecological Applications 16:2264–2275.
Ecological Archives A016-072.
Trzcinski, M. Kurtis, Robert Mohn, and W. Don Bowen. 2006.
Continued decline of an Atlantic cod population: How important is gray seal predation?
Ecological Applications 16:2276–2292.
Ecological Archives A016-073.
Tinker, M. Tim, Daniel F. Doak, James A. Estes, Brian B. Hatfield, Michelle M. Staedler, and James L. Bodkin. 2006.
Incorporating diverse data and realistic complexity into demographic estimation procedures for sea otters.
Ecological Applications 16:2293–2312.
Ecological Archives A016-074.
Chave, Jérôme, Helene C. Muller-Landau, Timothy R. Baker, Tomás A. Easdale, Hans ter Steege, and Campbell O. Webb. 2006.
Regional and phylogenetic variation of wood density across 2456 neotropical tree species.
Ecological Applications 16:2356–2367.
Ecological Archives A016-075.
Davis, Adam S., Douglas A. Landis, Victoria Nuzzo, Bernd Blossey, Esther Gerber, and Hariet L. Hinz. 2006.
Demographic models inform selection of biocontrol agents for garlic mustard (Allaria petiolata).
Ecological Applications 16:2399–2410.
Ecological Archives A016-076.
