Ecological Archives E093-145-A1
Jessica A. Bryant, Frank J. Stewart, John M. Eppley, and Edward F. DeLong. 2012. Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone. Ecology 93:1659–1673. http://dx.doi.org/10.1890/11-1204.1
Appendix A (Table A1). Bermuda Atlantic Time-Series (BATS) and Hawaii Ocean Time-Series (HOT) sample and sequence library characteristics.
|
Depth Series |
Depth of sample (m) |
No. sequenced reads* |
No. SSU reads |
SSU % identity to ARB-Silva‡ |
Volume of water filtered (L) |
% KEGG hits to total reads |
NCBI accession number |
| BATS216 | 20 | 344731 | 593 | 97.59 | 264 | 50.03 | SRX008032† |
| 50 | 424779 | 602 | 97.66 | 264 | 42.85 | SRX008033† | |
| 100 | 499615 | 554 | 97.34 | 264 | 45.63 | SRX008035† | |
| 500 | 166760 | 207 | 97.50 | 264 | 32.85 | SRX007384 | |
| HOT186 | 25 | 598938 | 834 | 97.63 | 264 | 40.57 | SRX007372† |
| 75 | 656018 | 818 | 98.00 | 264 | 39.66 | SRX007369† | |
| 110 | 460958 | 749 | 97.13 | 264 | 36.44 | SRX007370† | |
| 500 | 976346 | 1301 | 97.59 | 264 | 39.34 | SRX007371 |
*Duplicate reads not included
‡Average % sequence identity of each SSU read to its closest hit in the ARB-SILVA database
†Previously published in Coleman et al. 2010
Literature Cited
Coleman, M. L., and S. W. Chisholm. 2010. Ecosystem-specific selection pressures revealed through comparative population genomics. Proceedings of the National Academy of Sciences 107:18634–18639.